Banerjee A, Pattinson DJ, Wincek CL, Bunk P, Chapin SR, Navlakha S*, Meyer HV* (2024) BATMAN: Improved T cell receptor cross-reactivity prediction benchmarked on a comprehensive mutational scan database, bioRxiv, 2024.01.22.576714

Kovaleva VA, Pattinson DJ, Barton C, Chapin SR, Minervina AA, Richards KA, Sant AJ, Thomas PG*, Pogorelyy MV*, Meyer HV* (2023) copepodTCR: Identification of Antigen-Specific T Cell Receptors with combinatorial peptide pooling, bioRxiv, 2023.11.28.569052

Yamrom B, Lee Y, Marks S, Chorbadjiev L, Meyer HV, Iossifov I (2022) Snakeobjects: an object-oriented workflow management system, bioRxiv, 2022.12.08.519599

Loh L, Carcy S, Krovi HS, Domenico J, Spengler A, Lin Y, Torres J, Prabakar R, Palmer W, Norman PJ, Stone M, Brunetti T, Meyer HV*, Gapin L (2024) Unraveling the Phenotypic States of Human innate-like T Cells: Comparative Insights with Conventional T Cells and Mouse Models, Cell Reports

Kleeman SO, Ferrer M, Demestichas B, Bankier S, Lee H, Heywood T, Ruusalepp A, Bjorkegren JLM, Walker BR, Kleeman SO, Thakir TM, Demestichas B, Mourikis N, Loiero D, Ferrer M, Bankier S, Riazat-Kesh YJRA, Lee H, Chantzichristos D, Regan C, Preall J, Sinha S, Rosin N, Yipp B, de Almeida LGN, Biernaskie J, Dufour A, Tober-Lau P, Ruusalepp A, Bjorkegren JLM, Ralser M, Kurth F, Demichev V, Heywood T, Gao Q, Johannsson G, Koelzer VH, Walker BR, Meyer HV*, Janowitz T* (2023) Cystatin C is glucocorticoid responsive, directs recruitment of Trem2+ macrophages, and predicts failure of cancer immunotherapy, Cell Genomics

Mou H, Eskiocak O, Özler KA, Gorman M, Yue J, Jin Y, Wang Z, Gao Y, Janowitz T, Meyer HV, Yu T, Wilkinson JE, Kucukural A, Ozata DM, Beyaz S. (2023) CRISPR-induced exon skipping of β-catenin reveals tumorigenic mutants driving distinct subtypes of liver cancer. J Pathol (4):415-427

Carter JA, Strömich L, Peacey M, Chapin SR, Velten L, Steinmetz LM, Brors B, Pinto S & Meyer HV (2022) Transcriptomic diversity in human medullary thymic epithelial cells. Nature Communications

Kleeman SO, Cordioli M, Timmers PRHJ, Khan A, Tober-Lau P, Kurth F, Demichev V, Meyer HV, Wilson JF, Ralser M, Kiryluk K, Ganna A, Baillie K, Janowitz T (2022) Cystatin C is associated with adverse COVID-19 outcomes in diverse populations, IScience, 25(10):105040

Beyaz S, Roper J, Bauer-Rowe KE, Xifaras ME, Ergin I, Dohnalova L, Biton M, Shekar K, Mou H, Eskiocak O, Özata DM, Papciak K, Chung C, Almeqdadi M, Fein M, Valle-Encinas E, Erdemir A, Dogum K, Alici-Garipcan A, Meyer HV, Fox JG, Elinav E, Kucukural A, Kumar P, McAleer J, Thaiss CA, Regev A, Orkin SH, Yilmaz ÖH (2020) Dietary suppression of MHC-II expression in intestinal stem cells enhances intestinal tumorigenesis, 2021, Cell Stem Cell

Williams EH, Flint, TH’ Connell CM, Giglio D, Lee H, Ha T, Gablenz E, Bird N, Weaver JMJ, Potts H, Whitley CT, Bookman MA, Lynch AG, Meyer HV, Tavaré S, Janowitz T (2020) CamGFR v2: a new model for estimating the glomerular filtration rate from standardized or non standardized creatinine in patients with cancer, Clinical Cancer Research

Meyer HV*, Dawes TJ, Serrani M, Wenjia B, Tokarczuk P, Jiashen C, de Marvao A, Henry A, Lumbers RT, Gierten J, Thumberger T, Wittbrodt J, Ware JS, Rueckert D, Matthews PM, Prasad SK, Costantino ML, Birney E, Cook SA and O'Regan DP* (2020) Genetic and functional insights into the fractal structure of the heart. Nature, 584:589- 594

Meyer HV, Casale FP, Stegle O, Birney E (2018) LiMMBo: a simple, scalable approach for linear mixed models in high-dimensional genetic association studies, bioRxiv

Meyer HV, Birney E (2018) PhenotypeSimulator: a comprehensive framework for multi-trait, multi-locus phenotype to genotype simulation, Bioinformatics, bty197

Biffi C, de Marvao A, Attard MI, Dawes TJW, Whiffin N, Bai W, Shi W, Francis C, Meyer HV, Buchan R, Cook SA, Rueckert D, O’Regan DP (2017) Three-dimensional cardiovascular imaging-genetics: a mass univariate framework, Bioinformatics, btx552

Keil M, Sonner JK, Lanz TV, Oezen I, Bunse T, Bittner S, Meyer HV, Meuth SG, Wick W, Platten M. (2016) General control non-derepressible 2 (GCN2) in T cells controls disease progression of autoimmune neuroinflammation, Journal of Neuroimmunology, 297:117-126

Rattay K, Meyer HV, Herrmann C, Brors B, Kyewski B. (2015) Evolutionary conserved gene co-expression drives generation of self-antigen diversity in medullary thymic epithelial cells, Journal of Autoimmunity, 67:65-75

Beer R, Herbst K, Ignatiadis N, Kats I, Adlung L, Meyer HV, Niopek D, Christiansen T, Georgi F, Kurzawa N, Meichsner J, Rabe S, Riedel A, Sachs J, Schessner J, Schmidt F, Walch P, Niopek K, Heinemann T, Eils R, Di Ventura B. (2014) Creating functional engineered variants of the single-module non-ribosomal peptide synthetase IndC by T domain exchange, Molecular BioSystems, 10:1709-1718

Renner M, Wolf T, Meyer HV, Hartmann W, Penzel R, Ulrich A, Lehner B, Hovestadt V, Czwan E, Egerer G, Schmitt T, Alldinger I, Renker EK, Ehemann V, Eils R, Wardelmann E, Büttner R, Lichter P, Brors B, Schirmacher P, Mechtersheimer G. (2013) Integrative DNA methylation and gene expression analysis in high-grade soft tissue sarcomas. Genome Biology, 14:r137